1 to 6 of 6 literature results

• Visualizing sequence similarity of protein families.

  Classification of proteins into families is one of the main goals of functional analysis. Proteins are usually assigned to a family on the basis of th…

  Authors: Vamsi Veeramachaneni, Wojciech Makałowski

  Source: Genome research. 2004 Jun

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• DED: Database of Evolutionary Distances.

  A large database of homologous sequence alignments with good estimates of evolutionary distances can be a valuable resource for molecular evolutionary…

  Authors: Vamsi Veeramachaneni, Wojciech Makalowski

  Source: Nucleic acids research. 2005 Jan 1

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• Mammalian overlapping genes: the comparative perspective.

  It is believed that 3.2 billion bp of the human genome harbor approximately 35000 protein-coding genes. On average, one could expect one gene per 3000…

  Authors: Vamsi Veeramachaneni, Wojciech Makałowski, Michal Galdzicki, Raman Sood, Izabela Makałowska

  Source: Genome research. 2004 Feb

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• Mastering seeds for genomic size nucleotide BLAST searches.

  One of the most common activities in bioinformatics is the search for similar sequences. These searches are usually carried out with the help of progr…

  Authors: Valer Gotea, Vamsi Veeramachaneni, Wojciech Makałowski

  Source: Nucleic acids research. 2003 Dec 1

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• Eighty percent of proteins are different between humans and chimpanzees.

  The chimpanzee is our closest living relative. The morphological differences between the two species are so large that there is no problem in distingu…

  Authors: Galina Glazko, Vamsi Veeramachaneni, Masatoshi Nei, Wojciech Makałowski

  Source: Gene. 2005 Feb 14

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• Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

  The human genome sequence defines our inherent biological potential; the realization of the biology encoded therein requires knowledge of the function…

  Authors: Tadashi Imanishi, Takeshi Itoh, Yutaka Suzuki, Claire O'Donovan, Satoshi Fukuchi, Kanako O Koyanagi, Roberto A Barrero, Takuro Tamura, Yumi Yamaguchi-Kabata, Motohiko Tanino,…

  Source: PLoS biology. 2004 Jun

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