1 to 10 of 11 literature results

• In vitro kinetic analysis of fermentation of prebiotic inulin-type fructans by Bifidobacterium species reveals four different phenotypes.

  Kinetic analyses of bacterial growth, carbohydrate consumption, and metabolite production of 18 Bifidobacterium strains grown on fructose, oligofructo…

  Authors: Gwen Falony, Katerina Lazidou, An Verschaeren, Stefan Weckx, Dominique Maes, Luc De Vuyst

  Source: Applied and environmental microbiology. 2009 Jan

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• novoSNP, a novel computational tool for sequence variation discovery.

  Technological improvements shifted sequencing from low-throughput, work-intensive, gel-based systems to high-throughput capillary systems. This result…

  Authors: Stefan Weckx, Jurgen Del-Favero, Rosa Rademakers, Lieve Claes, Marc Cruts, Peter De Jonghe, Christine Van Broeckhoven, Peter De Rijk

  Source: Genome research. 2005 Mar

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• Linkage and association studies identify a novel locus for Alzheimer disease at 7q36 in a Dutch population-based sample.

  We obtained conclusive linkage of Alzheimer disease (AD) with a candidate region of 19.7 cM at 7q36 in an extended multiplex family, family 1270, asce…

  Authors: Rosa Rademakers, Marc Cruts, Kristel Sleegers, Bart Dermaut, Jessie Theuns, Yurii Aulchenko, Stefan Weckx, Tim De Pooter, Marleen Van den Broeck, Ellen Corsmit,…

  Source: American journal of human genetics. 2005 Oct

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• Development and validation of a species-independent functional gene microarray that targets lactic acid bacteria.

  During the last few years, genome-related information has become available for many microorganisms, including important food-related bacteria. Lactic …

  Authors: Stefan Weckx, Joke Allemeersch, Roel Van der Meulen, Gino Vrancken, Geert Huys, Peter Vandamme, Paul Van Hummelen, Luc De Vuyst

  Source: Applied and environmental microbiology. 2009 Oct

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• SNPbox: web-based high-throughput primer design from gene to genome.

  SNPbox is a modular software package that automates the design of PCR primers for large-scale amplification and sequencing projects in a standardized …

  Authors: Stefan Weckx, Peter De Rijk, Christine Van Broeckhoven, Jurgen Del-Favero

  Source: Nucleic acids research. 2004 Jul 1

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• SSHSuite: an integrated software package for analysis of large-scale suppression subtractive hybridization data.

  Suppression subtractive hybridization (SSH) is a widely used technique for the identification of differentially expressed genes. SSH as well as other …

  Authors: Stefan Weckx, Peter De Rijk, Christine Van Broeckhoven, Jurgen Del-Favero

  Source: BioTechniques. 2004 Jun

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• Metagenome and metatranscriptome analysis: does the flag always cover the cargo?

  Authors: Stefan Weckx, Luc De Vuyst

  Source: International journal of food microbiology. 2009 Aug 15

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• Thermodynamic behavior of short oligonucleotides in microarray hybridizations can be described using Gibbs free energy in a nearest-neighbor model.

  While designing oligonucleotide-based microarrays, cross-hybridization between surface-bound oligos and non-intended labeled targets is probably the m…

  Authors: Stefan Weckx, Enrico Carlon, Luc DeVuyst, Paul Van Hummelen

  Source: The journal of physical chemistry. B. 2007 Dec 6

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• SNPbox: web-based high-throughput primer design with an eye for repetitive sequences.

  In this omics era, researchers in biosciences need more than ever user-friendly, fast, and straightforward computational tools for high-throughput res…

  Authors: Stefan Weckx, Peter De Rijk, Wim Glassee, Christine Van Broeckhoven, Jurgen Del-Favero

  Source: Methods in molecular biology (Clifton, N.J.). 2007

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• SNPbox: a modular software package for large-scale primer design.

  SUMMARY: We developed a modular software package SNPbox that automates and standardizes the generation of PCR primers and is used in the strategy for …

  Authors: Stefan Weckx, Peter De Rijk, Christine Van Broeckhoven, Jurgen Del-Favero

  Source: Bioinformatics (Oxford, England). 2005 Feb 1

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