1 to 8 of 8 literature results

• Periodic oscillations of the genomic nucleotide sequences disclose major differences in the way of constructing homologous proteins from different procaryotic species.

  In this study, a set of 80 completely sequenced procaryotic genomes has been analysed by an alignment-free method, namely the expectancy-rectified fre…

  Authors: Piotr P Slonimski

  Source: Comptes rendus biologies. 2007 Jan

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• ISSCOR: Intragenic, Stochastic Synonymous Codon Occurrence Replacement--a new method for an alignment-free genome sequence analysis.

  Synonymous codons do not occur at equal frequencies. Codon usage and codon bias have been extensively studied. However, the sequential order in which …

  Authors: Jan P Radomski, Piotr P Slonimski

  Source: Comptes rendus biologies. 2009 Apr

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• Primary sequences of proteins from complete genomes display a singular periodicity: Alignment-free N-gram analysis.

  A method is proposed to represent and to analyze complete genome sequences (52 species from procaryotes and eukaryotes), based upon n-gram sequence's …

  Authors: Jan P Radomski, Piotr P Slonimski

  Source: Comptes rendus biologies. 2007 Jan

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• The bromodomain-containing protein Bdf1p acts as a phenotypic and transcriptional multicopy suppressor of YAF9 deletion in yeast.

  It was observed previously that the deletion of the open reading frame YNL107w (YAF9) was highly pleiotropic in yeast and caused defective growth phen…

  Authors: Michele M Bianchi, Giovanna Costanzo, Anna Chelstowska, Dorota Grabowska, Cristina Mazzoni, Eugenia Piccinni, Antonella Cavalli, Francesca Ciceroni, Joanna Rytka, Piotr P Slonimski,…

  Source: Molecular microbiology. 2004 Aug

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• F1-catalysed ATP hydrolysis is required for mitochondrial biogenesis in Saccharomyces cerevisiae growing under conditions where it cannot respire.

  Mutant strains of yeast Saccharomyces cerevisiae lacking a functional F1-ATPase were found to grow very poorly under anaerobic conditions. A single am…

  Authors: Linnka Lefebvre-Legendre, Axelle Balguerie, Stéphane Duvezin-Caubet, Marie-France Giraud, Piotr P Slonimski, Jean-Paul Di Rago

  Source: Molecular microbiology. 2003 Mar

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• Hierarchical clustering based upon contextual alignment of proteins: a different way to approach phylogeny.

  We perform a computational study using a new approach to the analysis of protein sequences. The contextual alignment model, proposed recently by Gambi…

  Authors: Anna Gambin, Piotr P Slonimski

  Source: Comptes rendus biologies. 2005 Jan

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• Yeast cells lacking the mitochondrial gene encoding the ATP synthase subunit 6 exhibit a selective loss of complex IV and unusual mitochondrial morphology.

  Atp6p is an essential subunit of the ATP synthase proton translocating domain, which is encoded by the mitochondrial DNA (mtDNA) in yeast. We have rep…

  Authors: Malgorzata Rak, Emmanuel Tetaud, François Godard, Isabelle Sagot, Bénédicte Salin, Stéphane Duvezin-Caubet, Piotr P Slonimski, Joanna Rytka, Jean-Paul di Rago

  Source: The Journal of biological chemistry. 2007 Apr 13

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• Increasing mitochondrial substrate-level phosphorylation can rescue respiratory growth of an ATP synthase-deficient yeast.

  In a previous study we have identified Fmc1p, a mitochondrial protein involved in the assembly/stability of the yeast F0F1-ATP synthase at elevated te…

  Authors: Christine Schwimmer, Linnka Lefebvre-Legendre, Malgorzata Rak, Anne Devin, Piotr P Slonimski, Jean-Paul di Rago, Michel Rigoulet

  Source: The Journal of biological chemistry. 2005 Sep 2

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