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Microenvironment analysis and identification of magnesium binding sites in RNA.
Interactions with magnesium (Mg2+) ions are essential for RNA folding and function. The locations and function of bound Mg2+ ions are difficult to cha…
Authors: D Rey Banatao, Russ B Altman, Teri E Klein
Source: Nucleic acids research. 2003 Aug 1
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WebFEATURE: An interactive web tool for identifying and visualizing functional sites on macromolecular structures.
WebFEATURE (http://feature.stanford.edu/webfeature/) is a web-accessible structural analysis tool that allows users to scan query structures for funct…
Authors: Mike P Liang, D Rey Banatao, Teri E Klein, Douglas L Brutlag, Russ B Altman
Source: Nucleic acids research. 2003 Jul 1
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An approach to crystallizing proteins by synthetic symmetrization.
Previous studies of symmetry preferences in protein crystals suggest that symmetric proteins, such as homodimers, might crystallize more readily on av…
Authors: D Rey Banatao, Duilio Cascio, Christopher S Crowley, Mark R Fleissner, Heather L Tienson, Todd O Yeates
Source: Proceedings of the National Academy of Sciences of the United States of America. 2006 Oct 31
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Ribosomal dynamics inferred from variations in experimental measurements.
The crystal structures of the ribosome reveal remarkable complexity and provide a starting set of snapshots with which to understand the dynamics of t…
Authors: Irene S Gabashvili, Michelle Whirl-Carrillo, Michael Bada, D Rey Banatao, Russ B Altman
Source: RNA (New York, N.Y.). 2003 Nov
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Mining biochemical information: lessons taught by the ribosome.
The publication of the crystal structures of the ribosome offers an opportunity to retrospectively evaluate the information content of hundreds of qua…
Authors: Michelle Whirl-Carrillo, Irene S Gabashvili, Michael Bada, D Rey Banatao, Russ B Altman
Source: RNA (New York, N.Y.). 2002 Mar
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